Thursday, September 25, 2014

Dictyostelium Predation Protocol(original)

Dictyostelium Predation Protocol

Materials
·   Cultures of selected bacteria
·   Klebsiella
·   Dictyostelium Ax2 grown on E.coli B/r
·   2.0mL eppendorf tubes
·   p200 pipette with tips
·   p1000 pipette with tips
·   Sterile loops
·   Sterile spreaders
·   Sterile water
·   p20 multichannel pipette with tips
·   SM/2 +proper antibiotic plates

Procedure

1.      Label one 2.0 mL eppendorf tube for each strain of bacteria being used
2.      Add 200 µL sterile H2O to each eppendorf tubes using a p200 pipette with corresponding tips.
3.      Add one loop of selected bacteria to the corresponding eppendorf tube.
·         Mix solution well with vortex or pipette
4.      Pipet 100µL of bacteria solution onto a SM/2 Chloramphnecol 20 mg/ml plate. Spread the solution evenly with a sterile spreader to create a bacterial lawn and let dry in the hood for 30 minutes.
5.      Add 500 mL of sterile H2O to an eppendorf tube and serial dilute 1:10 from 0 to -7 in 8 separate tubes using a full plate of fruiting Ax2 Dictyostelium grown on E. coli B/r.
·         Do this by adding 450µL sterile water to 7 eppendorf tubes, then transfer 50µL from the previous dilution.
6.      In a 96 well plate, fill one row with the 8 dilutions of Dictyostelium with 300µL, and refill the wells when needed.
7.      With a multichannel pipet, allocate 4 rows of 2 µL of the dilutions onto each plate.
8.      Let the plate sit upright for at least 30 minutes to prevent the spots from running together.
9.      Create a titer by adding 800µL of water to a 2.0ml eppendorf tube and a loop of K.a.
10.  Allocate 100µL of the bacteria solution onto 8 separate plates, and then mark the plates 0 through -7. Add 10 µL of each dilution to the corresponding plates and spread the liquid out evenly.
11.  Observe the plates every day for one week for plaque formation.
12. 
 0
-1
-2
-3
-4
-5
-7
-6
Before titer plates are overgrown, calculate the CFU for available plates



To start, we labeled a 2.0mL eppendorf tube for each strain of bacteria being used and added 200µL of sterile water to each tube using a p200 pipette. We added a loop of bacteria to each labeled tube and mixed well with a vortex. From these bacteria solutions, 100µL were pipetted onto a SM/2 Amp100 plate and spread evenly with a sterile spreader to create a bacterial lawn. The plates were dried in a hood for 30 minutes to allow for optimum Dictyostelium growth.  A Dictyostelium dilution was made by labeling 8, 2.0mL eppendorf tubes 0 to -7 and adding 500µL of sterile water to the first tube and 450µL to each of the following tubes using a p1000 pipette.  Then a plate of fruiting D. discoideum Ax2 was added to the first tube and 50µL were transferred to each following tube creating 1:10 dilutions. 300µL of each dilution were added to a column in a 96-well plate. Using a p20 multichannel pipette, 4 rows of 2µL of the dilutions were allocated onto each plate, changing tips between each row.  A K.a. titer was created by adding 800 µL of sterile water and a loop of K.a. to a 2.0 eppendorf tube. 100µL of the bacterial solution and 10µL of each dilution were allocated onto 8 separate SM/2 Amp100 plates labeled 0 to -7, and the liquid was spread out evenly on the plate. The plates and titer were observed for one week for plaque formation


Summary:
We started by suspended our selected bacteria in sterile water and created a bacterial lawn on an SM/2 Chloramphenicol 20 mg/ml plate with 100µL of the bacterial solution. A 1;10 Dictyostelium dilution was made with 8 total concentrations. Using a p20 multichannel pipet, 4 rows of 2µL of the dilutions were allocated onto each plate. A K.a. titer was created on 8 plates with a K.a. bacterial lawn and 10µL of each dilution. The plates and titer were observed for one week for plaque formation.